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蛋白中分子间相互作用检测方案(分子互作分析仪)

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Octet采用无流路,实时检测的方式,实现了高通量,高精度,低成本的检测,更好的支持了研究人员的基础研究与成果转化。反过来研究人员基于Octet?的灵活性,也不断开发出新的检测应用和方法,更加快速和深入的研究分子作用的机理,探索生命的奥秘!

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第三季度结束了,又到了陈老湿交季报的时间。第三季度国内采用生物层干涉技术(BLI)发表的文章依旧维持了高速增长的趋势,共发表超过80篇文章,同比增长60%。文章的单位和应用方向,陈老湿也做了小结。其中诸如南京中医药大学、中国药科大学和西湖大学等十几个单位发表的文章在两篇以上,详见下表(76篇):从应用方向上看,依旧涉及到多个方向。小分子的文章数量逐步提升,超过蛋白和抗体的应用的数量,比例已接近1 : 3。高速增长的原因主要有几点:BLI技术无流路,对溶剂(DMSO)不敏感,假阳性低,高通量,操作简单,成本低,仪器稳定性好等优点可以帮助研究人更快,更高质量的获得了小分子检测的结果。不同应用方向文章比例最具影响力Science|全球首个人源IgM同种型B细胞受体复合物高分辨率结构解析西湖大学施一公团队在Science期刊上首次报道了人源IgM同种型B细胞受体(IgM-BCR)的高分辨率三维结构,揭示了膜结合的IgM(mIgM)与Igα和Igβ异源二聚体复合物组装的分子机制,从而回答了B细胞受体如何组装这一重要科学问题。为了稳定IgM-BCR的结构,让其融合了VRC01抗体(一种针对HIV表面蛋白gp120的抗体)。那这个IgM-BCR表达的蛋白有活性码?文章就采用Octet® 非标记分子互作系统检测了其与gp120的结合活性。将IgM-BCR固化在链霉亲和素传感器上,与gp120单体和gp120三聚体结合,三聚体的亲和力较高,产生了明显的亲合作用(多聚体带来的多个位点结合,使得亲和力提高)。最具经济效益全球首个靶向CDK12/13的PROTAC降解剂乳腺癌(BC)是世界上和女性中最常见的癌症之一,其中三阴性的乳腺癌TNBC在乳腺癌中最为棘手。细胞周期蛋白依赖性激酶CDK,是 TNBC 治疗的潜在治疗靶点。以往针对的CDK的靶向药最终会产生耐药抗性,蛋白降解靶向嵌合体PROTAC可以定向降解靶蛋白,PROTAC 可以提高蛋白质降解的选择性并逃避耐药机制。暨南大学丁克团队报道了全球首个靶向CDK12/13的 PROTAC降解剂7f,它能够与 CDK12 和 CDK13 紧密结合,Octet® 检测结果显示7f母本化合物(化合物3,4)与CDK12/13的亲和力分别为 16.2 和 8.6 nM,亲和力高,并表现出出色的激酶组选择性。此外,文中还采用Incucyte® 实时活细胞分析系统长时间分析,发现该PROTAC对MFM223和MDA-MB-231肿瘤细胞具有很强的抗肿瘤活性。Incucyte® 实时检测药物对MFM223和MDA-MB-231肿瘤细胞的抑制生长最巧妙应用Octet® 分子垂钓助力纳米蛋白冠的原位分析近期,国家纳米科学中心陈春英团队采用Octet® 与质谱分析在纳米颗粒表面软蛋白冠原位动态分析方面取得重要突破。该方法通过BLI技术可实时监测蛋白冠的形成、交换和解离过程,通过原位、快速地洗脱多层蛋白冠的组分,实现了软、硬蛋白冠的高效分离、鉴定及时间分辨的动态研究,突破了软蛋白冠分析的技术瓶颈。研究提出的多层蛋白冠的分析新策略将为探究纳米颗粒与生物体相互作用,以及纳米药物的理性设计提供创新分析方法。最具“生命”的应用解析基于细胞的Octet® 检测光合作用不仅为植物提供了能量影响植物的生长与发育,也深刻影响植物的抗病性。浙江大学师恺课题组发现由Glc-RGS1-G蛋白信号通路介导的新的光强度相应防御系统,为研究植物细胞如何在不同环境中感知胞外糖、调节防御系统以及提高逆境抗性提供依据。基于细胞的生物层干涉技术,将原生质体(protoplast) 脱去细胞壁的细胞捕获到生物传感器表面,再与待测的糖分子结合,首次发现Glc特异性结合番茄RGS1蛋白,证实Glc诱导RGS1蛋白发生内吞现象;小身板,大能量针对新冠病毒双表位鲨鱼纳米抗体筛选与验证常规抗体相比,鲨鱼纳米抗体具有相对分子量小、抗原结合活性高、组织渗透性强、理化性质更稳定且制备成本低等优点。集美大学的研究人员免疫条纹斑竹鲨后,通过噬菌体展示和BLI技术在体外筛选和验证了针对新冠病毒的鲨鱼纳米抗体以及双表位组合抗体。文章使用的Octet® N1分子互作系统只有A4纸大小,一滴样品即可实现分子互作的检测,真正的小身板,大能量。文章海量的动力学、表位和竞争抑制的数据均来自于这台史上“最迷你”的互作仪。分子互作仪文章中大量动力学、表位和竞争抑制的数据Octet® 采用无流路,实时检测的方式,实现了高通量,高精度,低成本的检测,更好的支持了研究人员的基础研究与成果转化。反过来研究人员基于Octet®的灵活性,也不断开发出新的检测应用和方法,更加快速和深入的研究分子作用的机理,探索生命的奥秘!点击下载,获取全文《生物干涉层技术应用文集》Q3国内Octet® 文献一览表1.Costunolide covalently targets NACHT domain of NLRP3 to inhibit inflammasome activation and alleviate NLRP3-driven inflammatory diseasesActa Pharmaceutica Sinica BAvailable online 25 September 2022...Haowen XuJiahao ChenGuang Liang温州医科大学小分子2.Development of a thermostable SARS-CoV-2 variant-based bivalent protein vaccine with cross-neutralizing potency against Omicron subvariantsVirology20 September 2022...Rui WangXun HuangLiangzhi Xie北京义翘神州科技股份有限公司抗体3.Interaction of RAGE with α-synuclein fibrils mediates inflammatory response of microgliaCell Reports20 September 2022...Houfang LongShengnan ZhangDan Li中国科学院上海有机化学研究所蛋白4.Morphology-driven protein corona manipulation for preferential delivery of lipid nanodiscsNano Today11 September 2022...上海市静安区中心医院纳米材料5.Sequence difference of angiotensin-converting enzyme 2 between nonhuman primates affects its binding-affinity with SARS-CoV-2 S receptor binding domainBiosafety and HealthAvailable online 9 September 2022...Xiaojun ZhouJingjing ZhaoRui Jia中国生物技术股份有限公司蛋白6.The mechanisms of immune response and evasion by the main SARS-CoV-2 variantsiScience2 September 2022...Qiuli ChenJiawei ZhangZuyong Zhang浙江中医药大学蛋白7.Aptasensing a class of small molecules based on split aptamers and hybridization chain reaction-assisted AuNPs nanozymeFood Chemistry29 August 2022...Sai WangYinglin ZhaoXiangzhao Mao中国海洋大学DNA8.Mechanism investigation of Caspase-8/GSDMC dependent immunogenic cell death induced by Ophiopogonin B in NSCLC cellsPharmacological Research - Modern Chinese Medicine29 August 2022...Zhihui LiLing GuMeijuan Chen南京中医药大学小分子9.SIRT1 activation synergizes with FXR agonism in hepatoprotection via governing nucleocytoplasmic shuttling and degradation of FXRActa Pharmaceutica Sinica BAvailable online 27 August 2022...Shuang CuiHuijian HuHaiping Hao中国药科大学蛋白10.Fragments of bombinakinin M exist in lipopolysaccharide-stimulated skin secretions of Bombina maxima and show lipopolysaccharide-neutralizing activityJournal of Immunological Methods25 August 2022...Baiyu ZhangSaige YinXinwang Yang昆明医科大学第一附属医院小分子11.Ricin aptamer screening based on the QSAR model and construction of piezoresistive micro-cantilever aptasensorTalanta18 August 2022...Zhiwei LiuZhaoyang TongWei Ma民用nbc防护国家重点实验室DNA12.Oxidized tea polyphenol (OTP-3) targets EGFR synergistic nimotuzumab at inhibition of non-small cell lung tumor growthBioorganic Chemistry6 August 2022...Yanping HuangXiangdan CuanJun Sheng云南农业大学小分子13GF promotes PKM2 O-GlcNAcylation by stimulating O-GlcNAc transferase phosphorylation at Y976 and their subsequent associationJournal of Biological Chemistry3 August 2022...Yang WangHengyao ShuMin Wei东北师范大学多糖14.A preliminary cumulative risk assessment of Diethylhexyl phthalate and Dibutyl phthalate based on the inhibition of embryonic development via the PPARγ pathwayToxicology in Vitro25 July 2022...Haiqin FangHeng WangJianbo Yan国家食品安全风险评估中心小分子15.Inhibiting STAT3 signaling pathway by natural products for cancer prevention and therapy: In vitro and in vivo activity and mechanisms of actionPharmacological Research19 July 2022...Jing YangLingling WangJiang-Jiang Qin浙江中医药大学小分子16.Optimizing component formula suppresses lung cancer by blocking DTL-mediated PDCD4 ubiquitination to regulate the MAPK/JNK pathwayJournal of Ethnopharmacology15 July 2022...Qianqian FanQinwei LuLei Bi南京中医药大学小分子17.One-step high-throughput detection of low-abundance biomarker BDNF using a biolayer interferometry-based 3D aptasensorBiosensors and Bioelectronics14 July 2022...Shunxiang GaoQian LiJihong Wu上海耳鼻喉医院DNA18.Research trends in biomedical applications of two-dimensional nanomaterials over the last decade – A bibliometric analysisAdvanced Drug Delivery Reviews12 July 2022...Shuang ZhuYaping LiuYuliang ZhaoNational Center for Nanoscience and Technology垂钓19.Novel donepezil-chalcone-rivastigmine hybrids as potential multifunctional anti-Alzheimer's agents: Design, synthesis, in vitro biological evaluation, in vivo and in silico studiesBioorganic Chemistry7 July 2022...Zhipei SangPing BaiLei Tang贵州医科大学小分子20.Biochemical and structural characterization of a KTSC family single-stranded DNA-binding protein from EuryarchaeaInternational Journal of Biological Macromolecules7 July 2022...Lei TianKeli ZhuZhenfeng ZhangChinese PLA General Hospital First Medical CenterDNA21.Re-understanding of structure and anticoagulation: Fucosylated chondroitin sulfate from sea cucumber Ludwigothurea griseaCarbohydrate Polymers5 July 2022...Ronghua YinYing Pan Jinhua Zhao中南民族大学蔗糖22.An anti-picornaviral strategy based on the crystal structure of foot-and-mouth disease virus 2C proteinCell Reports5 July 2022...Chu ZhangFan YangSheng CuiChinese Academy of Medical Sciences and Peking Union Medical College多肽23.An emerging paradigm to develop analytical methods based on immobilized transmembrane proteins and its applications in drug discoveryTrAC Trends in Analytical Chemistry4 July 2022...Qian LiGuowei YinXinfeng Zhao西北大学蛋白24.A facile and integrated aptamer-based platform for preliminary and simultaneous screening of group targetsSensors and Actuators B: Chemical3 July 2022...Lele WangRui MaXiangzhao Mao中国海洋大学DNA25.Discovery of Isoform-Selective Akt3 Degraders Overcoming Osimertinib-Induced Resistance in Non-Small Cell Lung Cancer CellsJournal of Medicinal Chemistry暨南大学小分子26.SARS-CoV-2 Delta and Omicron variants evade population antibody response by mutations in a single spike epitopeNature Microbiology volume 7, pages1635–1649 (2022)Guangzhou Institutes of Biomedicine and Health抗体27.Engineering SARS-CoV-2 specific cocktail antibodies into a bispecific format improves neutralizing potency and breadthNature Communications volume 13, Article number: 5552 (2022)西湖大学抗体28.Metabolic pathway assembly using docking domains from type I cis-AT polyketide synthasesNature Communications volume 13, Article number: 5541 (2022)Shenzhen Institute of Synthetic Biology蛋白29.Insulin induces insulin receptor degradation in the liver through EphB4Nature Metabolism volume 4, pages1202–1213 (2022)Chinese Academy of Medical Sciences and Peking Union Medical College蛋白30.Celastrol recruits UBE3A to recognize and degrade the DNA binding domain of steroid receptorsOncogene volume 41, pages4754–4767 (2022)上海生物化学与细胞生物学研究所蛋白31.In situ analysis of nanoparticle soft corona and dynamic evolutionNature Communications volume 13, Article number: 5389 (2022)Institute of High Energy Physics & National Center for Nanoscience and Technology of China垂钓32.LDLR, LRP1, and Megalin redundantly participate in the uptake of Clostridium novyi alpha-toxinCommunications Biology volume 5, Article number: 906 (2022) 西湖大学蛋白33.A potent neutralizing antibody provides protection against SARS-CoV-2 Omicron and Delta variants via nasal deliverySignal Transduction and Targeted Therapy volume 7, Article number: 301 (2022) 中国科学院武汉病毒研究所抗体34.Structural insights into partner selection for MYB and bHLH transcription factor complexesNature Plants volume 8, pages1108–1117 (2022复旦大学蛋白35.A nanomaterial targeting the spike protein captures SARS-CoV-2 variants and promotes viral eliminationNature Nanotechnology volume 17, pages993–1003 (2022)中国科学院深圳先进技术研究院纳米材料36.Long non-coding RNA DARS-AS1 promotes tumor progression by directly suppressing PACT-mediated cellular stressCommunications Biology volume 5, Article number: 822 (2022)清华大学RNA37.AvmM catalyses macrocyclization through dehydration/Michael-type addition in alchivemycin A biosynthesisNature Communications volume 13, Article number: 4499 (2022)南京大学小分子38.Structural insights into auxin recognition and efflux by Arabidopsis PIN1.Nature volume 609, pages611–615 (2022)中国科学技术大学抗体39.APOE interacts with ACE2 inhibiting SARS-CoV-2 cellular entry and inflammation in COVID-19 patientsSignal Transduction and Targeted Therapy volume 7,厦门大学蛋白40.Discovery of 2-(1-(3-Chloro-4-cyanophenyl)-1H-pyrazol-3-yl)acetamides as Potent, Selective, and Orally Available Antagonists Targeting the Androgen ReceptorJ. Med. Chem. 2022浙江大学小分子41.PDTAC: Targeted Photodegradation of GPX4 Triggers Ferroptosis and Potent Antitumor ImmunityJ. Med. Chem. 2022, 65, 18, 12176–12187北京大学小分子42.Exploring the Binding Affinity and Mechanism between ACE2 and the Trimers of Delta and Omicron Spike Proteins by Molecular Dynamics Simulation and BioassayJ. Chem. Inf. Model. 2022, 62, 18, 4512–4522中国科学院上海药物研究所蛋白43.Insight into Thermodynamic and Kinetic Profiles in Small-Molecule OptimizationJ. Med. Chem. 2022, 65, 16, 10809–10847中国药科大学蛋白44.Discovery of a Highly Potent and Selective Dual PROTAC Degrader of CDK12 and CDK13J. Med. Chem. 2022, 65, 16, 11066–11083暨南大学小分子45.Selective Photoaffinity Probe for Monitoring Farnesoid X Receptor Expression in Cultured CellsAnal. Chem. 2022, 94, 30, 10722–10729中国药科大学小分子46.Branched Polyethylenimine as a Carrier for Significantly Improving the Biopanning Efficiency of Phages Specific to HaptenACS Appl. Polym. Mater. 2022, 4, 8, 5737–5745中国海洋大学抗体47.Schisandrin B Attenuates Diabetic Cardiomyopathy by Targeting MyD88 and Inhibiting MyD88-Dependent Inflammation https://doi.org/10.1002/advs.202202590温州医科大学小分子48.Substrate-induced dimerization of elaiophylin glycosyltransferase reveals a novel self-activating form of glycosyltransferase for symmetric glycosylationActa Crystallographica Section DGuangzhou Institutes of Biomedicine and Health,小分子49.Novel hKDR mouse model depicts the antiangiogenesis and apoptosis-promoting effects of neutralizing antibodies targeting vascular endothelial growth factor receptor 2 https://doi.org/10.1111/cas.15594National Institutes for Food and Drug Control (NIFDC)抗体50.Calycosin protects against oxidative stress-induced cardiomyocyte apoptosis by activating aldehyde dehydrogenase 2https://doi.org/10.1002/ptr.7591the Second Affiliated Hospital of Guangzhou Medical University小分子51.Novel application of anti-human Fc nanobody for screening high-producing CHO cells for monoclonal antibody https://doi.org/10.1002/elsc.202200028Shanghai Bao Pharmaceuticals Co., Ltd.,抗体52.Succinylation Inhibits the Enzymatic Hydrolysis of the Extracellular Matrix Protein Fibrillin 1 and Promotes Gastric Cancer Progressionhttps://doi.org/10.1002/advs.202200546First Affiliated Hospital of Nanjing Medical University多肽53.Vegetable-derived indole enhances the melanoma-treating efficacy of chemotherapeuticshttps://doi.org/10.1002/ptr.7565南京中医药大学小分子54.Crucial role of Ca2+/CN signalling pathway in the antifungal activity of disenecioyl-cis-khellactone against Botrytis cinereahttps://doi.org/10.1002/ps.7085江苏省中国科学院植物研究所小分子55.Third-Generation Covalent TMP-Tag for Fast Labeling and Multiplexed Imaging of Cellular Proteins北京大学蛋白56.Development of a variant of dinutuximab with enhanced antitumor efficacy and reduced induction of neuropathic painhttps://doi.org/10.1002/2211-5463.13464 Shanghai Mabstone Biotechonology抗体57.Glucose sensing by regulator of G protein signaling 1 (RGS1) plays a crucial role in coordinating defense in response to environmental variation in tomato https://doi.org/10.1111/nph.18356浙江大学细胞58.Structures, biomimetic synthesis, and anti-SARS-CoV-2 activity of two pairs of enantiomeric phenylpropanoid-conjugated protoberberine alkaloids from the rhizomes of Corydalis decumbensArchives of Pharmacal Research volume 45, pages631–643 (2022)澳门科技大学蛋白59.Screening and Characterization of Shark-Derived VNARs against SARS-CoV-2 Spike RBD ProteinInt. J. Mol. Sci. 2022, 23(18), 10904集美大学蛋白60.A Sulfated Abalone Polysaccharide Inhibited SARS-CoV-2 Infection of Vero E6 Cells In VitroFoods 2022, 11(18), 2865大连工业大学多糖61.A potent synthetic nanobody with broad-spectrum activity neutralizes SARS-CoV-2 virus and the Omicron variant BA.1 through a unique binding modeJournal of Nanobiotechnology volume 20, Article number: 411 (2022)The Affiliated Hospital of Qingdao University抗体62.A Label-Free Colorimetric Aptasensor Containing DNA Triplex Molecular Switch and AuNP Nanozyme for Highly Sensitive Detection of SaxitoxinXiaoyan Qi, Ling Li, Xiaochen Yan, Yinglin Zhao, Lele Wang, Rui Ma, Sai Wang & Xiangzhao Mao Journal of Ocean University of China volume 21, pages1343–1350 (2022DNA63.Identifying the Epitopes of Bacillus thuringiensis Cry2Aa Toxin Involved in Cadherin Interaction by a Monoclonal AntibodyCheng Shen, Yi-hang Li, Man-man Lin, Jiang-zhao Zhang, Jing Wang, Mei-jing Gao, Xiao Zhang, Xiao-dan Hu, Yuan Liu & Xian-jin Liu Applied Biochemistry and Biotechnology (2022)南京农业大学抗体64.Optimization of Gonyautoxin1/4-Binding G-Quadruplex Aptamers by Label-Free Surface-Enhanced Raman SpectroscopyToxins 2022, 14(9), 622; https://doi.org/10.3390/toxins14090622海军军医大学DNA65.Evolution of Interferon-Gamma Aptamer with Good Affinity and Analytical Utility by a Rational In Silico Base Mutagenesis Post-SELEX StrategyBeijing University of Chemical Technology北京化工大学DNA66.[Progress of target determination and mechanism of bioactive components of traditional Chinese medicine] Zhongguo Zhongyao Zazhi北京中医药大学小分子67.Structural Basis of a Novel Agonistic Anti-OX40 Antibody.Biomolecules 2022, 12(9), 1209丁浮靶点抗体68.CDKN2AIP is critical for spermiogenesis and germ cell developmentYuming Cao, Qi Sun, Zhenlie Chen, Jing Lu, Ting Geng, Ling Ma & Yuanzhen Zhang Cell & Bioscience volume 12Zhongnan Hospital of Wuhan UniversityDNA69.Galangin Exhibits Neuroprotective Effects in 6-OHDA-Induced Models of Parkinson’s Disease via the Nrf2/Keap1 PathwayPharmaceuticals 2022, 15(8), 1014西南医科大学小分子70.Structural Study of SARS-CoV-2 Antibodies Identifies a Broad-Spectrum Antibody That Neutralizes the Omicron Variant by Disassembling the Spike TrimerStructural Biology复旦大学抗体71.Anti-mesothelin CAR-T immunotherapy in patients with ovarian cancerCancer Immunology, Immunotherapy (2022)南京师范大学抗体72.BTApep-TAT peptide inhibits ADP-ribosylation of BORIS to induce DNA damage in cancerMolecular Cancer volume 21, Article number: 158 (2022) 杭州医学院多肽73.Simultaneous Maturation of Single Chain Antibody Stability and Affinity by CHO Cell DisplayBioengineering 2022, 9(8), 360中科院生物物理研究所定量74.The Generation of Dual-Targeting Fusion Protein PD-L1/CD47 for the Inhibition of Triple-Negative Breast CancerBiomedicines 2022, 10(8), 1843上海交通大学蛋白75.A Small-Molecule Inhibitor of the Anthranilyl-CoA Synthetase PqsA for the Treatment of Multidrug-Resistant Pseudomonas aeruginosaAntimicrobial Chemotherapy浙江工业大学小分子76.Cryo-EM structure of the human IgM B cell receptorSCIENCE VOL. 377西湖大学

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